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Pharmacological interventions for smoking cessation: an overview and network meta-analysis 2013 Department of Primary Care Health Sciences, University of Oxford, Oxford, UK. kate.cahill@phc.ox.ac.uk.
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Print(0)
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Journal Article
Periodical, Full
The Cochrane database of systematic reviews
Periodical, Abbrev.
Cochrane Database Syst.Rev.
Pub Date Free Form
31-May
Volume
(5):CD009329. doi
Issue
5
Start Page
CD009329
Other Pages
Notes
LR: 20160602; JID: 100909747; 0 (Alkaloids); 0 (Antidepressive Agents, Second-Generation); 0 (Azocines); 0 (Benzazepines); 0 (Nicotinic Agonists); 0 (Quinolizines); 0 (Quinoxalines); 01ZG3TPX31 (Bupropion); 53S5U404NU (cytisine); BL03SY4LXB (Nortriptyline
Place of Publication
England
ISSN/ISBN
1469-493X; 1361-6137
Accession Number
PMID: 23728690
Language
eng
SubFile
Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't; Review; IM
DOI
10.1002/14651858.CD009329.pub2 [doi]
Output Language
Unknown(0)
PMID
23728690
Abstract
BACKGROUND: Smoking is the leading preventable cause of illness and premature death worldwide. Some medications have been proven to help people to quit, with three licensed for this purpose in Europe and the USA: nicotine replacement therapy (NRT), bupropion, and varenicline. Cytisine (a treatment pharmacologically similar to varenicline) is also licensed for use in Russia and some of the former socialist economy countries. Other therapies, including nortriptyline, have also been tested for effectiveness. OBJECTIVES: How do NRT, bupropion and varenicline compare with placebo and with each other in achieving long-term abstinence (six months or longer)? How do the remaining treatments compare with placebo in achieving long-term abstinence? How do the risks of adverse and serious adverse events (SAEs) compare between the treatments, and are there instances where the harms may outweigh the benefits? METHODS: The overview is restricted to Cochrane reviews, all of which include randomised trials. Participants are usually adult smokers, but we exclude reviews of smoking cessation for pregnant women and in particular disease groups or specific settings. We cover nicotine replacement therapy (NRT), antidepressants (bupropion and nortriptyline), nicotine receptor partial agonists (varenicline and cytisine), anxiolytics, selective type 1 cannabinoid receptor antagonists (rimonabant), clonidine, lobeline, dianicline, mecamylamine, Nicobrevin, opioid antagonists, nicotine vaccines, and silver acetate. Our outcome for benefit is continuous or prolonged abstinence at least six months from the start of treatment. Our outcome for harms is the incidence of serious adverse events associated with each of the treatments. We searched the Cochrane Database of Systematic Reviews (CDSR) in The Cochrane Library, for any reviews with 'smoking' in the title, abstract or keyword fields. The last search was conducted in November 2012. We assessed methodological quality using a revised version of the AMSTAR scale. For NRT, bupropion and varenicline we conducted network meta-analyses, comparing each with the others and with placebo for benefit, and varenicline and bupropion for risks of serious adverse events. MAIN RESULTS: We identified 12 treatment-specific reviews. The analyses covered 267 studies, involving 101,804 participants. Both NRT and bupropion were superior to placebo (odds ratios (OR) 1.84; 95% credible interval (CredI) 1.71 to 1.99, and 1.82; 95% CredI 1.60 to 2.06 respectively). Varenicline increased the odds of quitting compared with placebo (OR 2.88; 95% CredI 2.40 to 3.47). Head-to-head comparisons between bupropion and NRT showed equal efficacy (OR 0.99; 95% CredI 0.86 to 1.13). Varenicline was superior to single forms of NRT (OR 1.57; 95% CredI 1.29 to 1.91), and to bupropion (OR 1.59; 95% CredI 1.29 to 1.96). Varenicline was more effective than nicotine patch (OR 1.51; 95% CredI 1.22 to 1.87), than nicotine gum (OR 1.72; 95% CredI 1.38 to 2.13), and than 'other' NRT (inhaler, spray, tablets, lozenges; OR 1.42; 95% CredI 1.12 to 1.79), but was not more effective than combination NRT (OR 1.06; 95% CredI 0.75 to 1.48). Combination NRT also outperformed single formulations. The four categories of NRT performed similarly against each other, apart from 'other' NRT, which was marginally more effective than NRT gum (OR 1.21; 95% CredI 1.01 to 1.46). Cytisine (a nicotine receptor partial agonist) returned positive findings (risk ratio (RR) 3.98; 95% CI 2.01 to 7.87), without significant adverse events or SAEs. Across the 82 included and excluded bupropion trials, our estimate of six seizures in the bupropion arms versus none in the placebo arms was lower than the expected rate (1:1000), at about 1:1500. SAE meta-analysis of the bupropion studies demonstrated no excess of neuropsychiatric (RR 0.88; 95% CI 0.31 to 2.50) or cardiovascular events (RR 0.77; 95% CI 0.37 to 1.59). SAE meta-analysis of 14 varenicline trials found no difference between th
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Book Title
Database
Publisher
Data Source
Authors
Cahill,K., Stevens,S., Perera,R., Lancaster,T.
Original/Translated Title
URL
Date of Electronic
20130531
PMCID
Editors
Pharmacophore modeling and virtual screening studies of checkpoint kinase 1 inhibitors 2009 State Key Laboratory of Biotherapy, West China Hospital, West China School of Pharmacy, Sichuan University.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Chemical & pharmaceutical bulletin
Periodical, Abbrev.
Chem.Pharm.Bull.(Tokyo)
Pub Date Free Form
Jul
Volume
57
Issue
7
Start Page
704
Other Pages
709
Notes
LR: 20111102; JID: 0377775; 0 (Enzyme Inhibitors); EC 2.7.- (Protein Kinases); EC 2.7.11.1 (Checkpoint kinase 1); ppublish
Place of Publication
Japan
ISSN/ISBN
0009-2363; 0009-2363
Accession Number
PMID: 19571415
Language
eng
SubFile
Journal Article; IM
DOI
JST.JSTAGE/cpb/57.704 [pii]
Output Language
Unknown(0)
PMID
19571415
Abstract
In this study, chemical feature-based 3-dimensional (3D) pharmacophore models of Checkpoint kinase 1 (Chk1) inhibitors were developed based on the known inhibitors of Chk1. The best pharmacophore model Hypo1 was characterized by the best correlation coefficient (0.9577), and the lowest root mean square deviation (0.8871). Hypo1 consists of one hydrogen-bond acceptor, one hydrogen-bond donor, and two hydrophobic features, as well as one excluded volume. This pharmacophore model was further validated by both test set and cross validation methods. A comparison analysis of Hypo1 with chemical features in the active site of Chk1 indicates that the pharmacophore model Hypo1 can correctly reflect the interactions between Chk1 and its ligands. Then Hypo1 was used to screen chemical databases, including Specs and Chinese Nature Product Database (CNPD) for potential lead compounds. The hit compounds were subsequently subjected to filtering by Lipinski's rule of five and docking study to refine the retrieved hits. Finally some of the most potent (estimated) compounds were selected from the final refined hits and suggested for further experimental investigation.
Descriptors
Catalytic Domain, Combinatorial Chemistry Techniques, Computer Simulation, Enzyme Inhibitors/chemistry/pharmacology, Models, Chemical, Models, Molecular, Protein Kinases/chemistry/metabolism, Structure-Activity Relationship
Links
Book Title
Database
Publisher
Data Source
Authors
Chen,J. J., Liu,T. L., Yang,L. J., Li,L. L., Wei,Y. Q., Yang,S. Y.
Original/Translated Title
URL
Date of Electronic
PMCID
Editors
Phase-dependent antifungal activity against Aspergillus fumigatus developing multicellular filamentous biofilms 2008 Department of Biological and Biomedical Sciences, Glasgow Caledonian University, Glasgow, UK.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
The Journal of antimicrobial chemotherapy
Periodical, Abbrev.
J.Antimicrob.Chemother.
Pub Date Free Form
Dec
Volume
62
Issue
6
Start Page
1281
Other Pages
1284
Notes
LR: 20141120; JID: 7513617; 0 (Antifungal Agents); 0 (Echinocandins); 0 (Formazans); 0 (Pyrimidines); 0 (Triazoles); 70709-62-5 (1,5-bis(2-methoxy-4-nitro-5-sulfophenyl)-3-((phenylamino)carbonyl)formazan); 7XU7A7DROE (Amphotericin B); F0XDI6ZL63 (caspofun
Place of Publication
England
ISSN/ISBN
1460-2091; 0305-7453
Accession Number
PMID: 18819968
Language
eng
SubFile
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; IM
DOI
10.1093/jac/dkn402 [doi]
Output Language
Unknown(0)
PMID
18819968
Abstract
OBJECTIVES: Aspergillus fumigatus undergoes morphological transition throughout its growth and development. These changes have direct implications for the effectiveness of antifungal treatment. Here we report the in vitro antifungal activity of voriconazole, amphotericin B and caspofungin against three specific phases of multicellular development of A. fumigatus. METHODS: A. fumigatus conidia were propagated for 8, 12 and 24 h prior to antifungal challenge. The resultant activity of the three agents tested was determined using an XTT reduction assay to assess both endpoint and time-kill susceptibility profiles. RESULTS: Endpoint susceptibility testing demonstrated a time-dependent decrease in efficacy for all three antifungal agents as the complexity of the A. fumigatus hyphal structure developed. Overall, amphotericin B exhibited the best spectrum of activity at each phase of growth, but was comparable to voriconazole against germinated conidial growth (8 h). Later, both voriconazole and caspofungin were ineffective against complex mycelial structures (12 and 24 h). Time-kill studies demonstrated that amphotericin B was significantly more efficacious at reducing A. fumigatus metabolism than both voriconazole and caspofungin for all three growth phases examined, most notably after 1 h of drug exposure (P < 0.001). CONCLUSIONS: Overall, the data presented demonstrate that treatment of actively growing A. fumigatus cells with antifungal agents is more efficacious than treating mature structures in vitro. Amphotericin B was consistently more effective against each phase and displayed rapid effects, and therefore may be a suitable option for managing patient groups at risk from aspergillosis infections.
Descriptors
Amphotericin B/pharmacology, Antifungal Agents/pharmacology, Aspergillus fumigatus/drug effects, Biofilms/drug effects, Echinocandins/pharmacology, Formazans/metabolism, Humans, Microbial Sensitivity Tests/methods, Microbial Viability, Mycelium/drug effects, Oxidation-Reduction, Pyrimidines/pharmacology, Spores, Fungal/drug effects, Triazoles/pharmacology, Voriconazole
Links
Book Title
Database
Publisher
Data Source
Authors
Mowat,E., Lang,S., Williams,C., McCulloch,E., Jones,B., Ramage,G.
Original/Translated Title
URL
Date of Electronic
20080926
PMCID
Editors
Phenolic compounds in particles of mainstream waterpipe smoke 2013 Chemistry Department, American University of Beirut, Beirut, Lebanon.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco
Periodical, Abbrev.
Nicotine Tob.Res.
Pub Date Free Form
Jun
Volume
15
Issue
6
Start Page
1107
Other Pages
1112
Notes
LR: 20150219; GR: R01 DA025659/DA/NIDA NIH HHS/United States; GR: R01CA120142/CA/NCI NIH HHS/United States; GR: R01DA025659/DA/NIDA NIH HHS/United States; JID: 9815751; 0 (Phenols); 0 (Smoke); OID: NLM: PMC3716329; 2012/11/22 [aheadofprint]; ppublish
Place of Publication
England
ISSN/ISBN
1469-994X; 1462-2203
Accession Number
PMID: 23178319
Language
eng
SubFile
Journal Article; Research Support, N.I.H., Extramural; IM
DOI
10.1093/ntr/nts255 [doi]
Output Language
Unknown(0)
PMID
23178319
Abstract
INTRODUCTION: Waterpipe tobacco smoking has in recent years become a popular international phenomenon, particularly among youth. While it has been shown to deliver significant quantities of several carcinogenic and toxic substances, phenols, an important class of chemical compounds thought to promote DNA mutation and cardiovascular diseases, however, has not been studied. Due to the relatively low temperature characteristic of waterpipe tobacco during smoking (i.e.,
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Database
Publisher
Data Source
Authors
Sepetdjian,E., Abdul Halim,R., Salman,R., Jaroudi,E., Shihadeh,A., Saliba,N.A.
Original/Translated Title
URL
Date of Electronic
20121122
PMCID
PMC3716329
Editors
Phenotypic and genetic heterogeneity of lactic acid bacteria isolated from &quot;Alheira&quot;, a traditional fermented sausage produced in Portugal 2009 CBQF, Escola Superior de Biotecnologia, Universidade Catolica Portuguesa; Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto, Portugal.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Meat Science
Periodical, Abbrev.
Meat Sci.
Pub Date Free Form
Jul
Volume
82
Issue
3
Start Page
389
Other Pages
398
Notes
JID: 101160862; 2008/11/10 [received]; 2009/02/09 [revised]; 2009/02/10 [accepted]; 2009/02/20 [aheadofprint]; ppublish
Place of Publication
England
ISSN/ISBN
0309-1740; 0309-1740
Accession Number
PMID: 20416703
Language
eng
SubFile
Journal Article
DOI
10.1016/j.meatsci.2009.02.009 [doi]
Output Language
Unknown(0)
PMID
20416703
Abstract
The aim of this study was to evaluate the phenotypic and genetic heterogeneity of lactic acid bacteria (LAB) isolated from "Alheira", a fermented sausage produced in Portugal. LAB were identified to genus and species level by phenotypic characteristics, using genus or species-specific primers and sequencing of the gene encoding 16S rRNA. Two-hundred and eighty-three isolates were grouped into 14 species. Lactobacillus plantarum was isolated from all sausages and Enterococcusfaecalis from most of the samples. Low numbers of Lactobacillus paraplantarum, Lactobacillus brevis, Lactobacillus rhamnosus, Lactobacillus sakei, Lactobacillus zeae, Lactobacillus paracasei, Leuconostoc mesenteroides, Pediococcus pentosaceus, Pediococcus acidilactici, Weissella cibaria, Weissella viridescens and Enterococcus faecium were recorded. The genetic heterogeneity of L. plantarum and E. faecalis strains were determined by numerical analysis of DNA banding patterns obtained by RAPD-PCR. Strains of L. plantarum and E. faecalis were different from different producers. This study forms the basis from which starter cultures could be selected for production of "Alheira".
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Database
Publisher
Data Source
Authors
Albano,H., van Reenen,C. A., Todorov,S. D., Cruz,D., Fraga,L., Hogg,T., Dicks,L. M., Teixeira,P.
Original/Translated Title
URL
Date of Electronic
20090220
PMCID
Editors
Phenotypic and genotypic analyses of lactic acid bacteria in local fermented food, breast milk and faeces of mothers and their babies 2011 Lehrstuhl fur Technische Mikrobiologie, Technische Universitat Munchen, Weihenstephaner Steig 16, 85350 Freising, Germany.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Systematic and applied microbiology
Periodical, Abbrev.
Syst.Appl.Microbiol.
Pub Date Free Form
Apr
Volume
34
Issue
2
Start Page
148
Other Pages
155
Notes
CI: Copyright (c) 2011; JID: 8306133; 2010/11/05 [received]; 2010/12/20 [revised]; 2010/12/21 [accepted]; ppublish
Place of Publication
Germany
ISSN/ISBN
1618-0984; 0723-2020
Accession Number
PMID: 21300508
Language
eng
SubFile
Journal Article; Research Support, Non-U.S. Gov't; IM
DOI
10.1016/j.syapm.2010.12.001 [doi]
Output Language
Unknown(0)
PMID
21300508
Abstract
Lactic acid bacteria (LAB) are generally accepted as beneficial to the host and their presence is directly influenced by ingestion of fermented food or probiotics. While the intestinal lactic microbiota is well-described knowledge on its routes of inoculation and competitiveness towards selective pressure shaping the intestinal microbiota is limited. In this study, LAB were isolated from faecal samples of breast feeding mothers living in Syria, from faeces of their infants, from breast milk as well as from fermented food, typically consumed in Syria. A total of 700 isolates were characterized by genetic fingerprinting with random amplified polymorphic DNA (RAPD) and identified by comparative 16S rDNA sequencing and Matrix Assisted Laser Desorption Ionization-Time-Of-Flight Mass Spectrometry (MALDI-TOF-MS) analyses. Thirty six different species of Lactobacillus, Enterococcus, Streptococcus, Weissella and Pediococcus were identified. RAPD and MALDI-TOF-MS patterns allowed comparison of the lactic microbiota on species and strain level. Whereas some species were unique for one source, Lactobacillus plantarum, Lactobacillus fermentum, Pediococcus pentosaceus and Lactobacillus brevis were found in all sources. Interestingly, identical RAPD genotypes of L. plantarum, L. fermentum, L. brevis, Enterococcus faecium, Enterococcus faecalis and P. pentosaceus were found in the faeces of mothers, her milk and in faeces of her babies. Diversity of RAPD types found in food versus human samples suggests the importance of host factors in colonization and individual host specificity, and support the hypothesis that there is a vertical transfer of intestinal LAB from the mother's gut to her milk and through the milk to the infant's gut.
Descriptors
Links
Book Title
Database
Publisher
Elsevier GmbH
Data Source
Authors
Albesharat,R., Ehrmann,M.A., Korakli,M., Yazaji,S., Vogel,R.F.
Original/Translated Title
URL
Date of Electronic
PMCID
Editors
Phenotypic and genotypic characterization of lactic acid bacteria isolated from Artisanal Italian goat cheese 2010 Dipartimento di Scienze e Tecnologie Alimentari e Microbiologiche sez, Microbiologia Agraria Alimentare Ecologica, Universita degli Studi di Milano, Via Celoria, 2 201333 Milano, Italy.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Journal of food protection
Periodical, Abbrev.
J.Food Prot.
Pub Date Free Form
Apr
Volume
73
Issue
4
Start Page
657
Other Pages
662
Notes
JID: 7703944; 0 (DNA, Bacterial); 0 (RNA, Ribosomal, 16S); ppublish
Place of Publication
United States
ISSN/ISBN
0362-028X; 0362-028X
Accession Number
PMID: 20377953
Language
eng
SubFile
Journal Article; IM
DOI
Output Language
Unknown(0)
PMID
20377953
Abstract
The lactic acid bacteria community in traditional goat cheese produced in three dairies in Valsesia (Piemonte, Italy) was studied at different steps of the manufacturing process. These cheeses were produced from raw milk without starter bacteria, and no protocol was followed during the manufacturing process. Three hundred thirty-two isolates were characterized and grouped by results of both morphophysiological tests and random amplification of polymorphic DNA plus PCR analysis. Bacteria were identified by partial sequencing of the 16S rRNA gene. Lactococci were the dominant lactic acid bacteria in raw milk. Their initial numbers ranged from 5 to 7 log CFU ml(-1). Their levels increased during manufacturing and decreased during ripening. The growth trend for enterococci was comparable to that of lactococci, although enterococci counts were lower. Lactococcus lactis subsp. cremoris, Lactococcus garviae, and Enterococcus faecalis were the most frequently isolated species during goat cheese manufacturing, whereas the highest numbers of Enterococcus (E. faecium, E. durans, E. gilvus, and E. casseliflavus) were isolated with the greatest frequency from ripened cheese samples. Occasionally, Leuconostoc mesenteroides, Leuconostoc lactis, and Lactobacillus paraplantarum also were isolated.
Descriptors
Animals, Cheese/microbiology/standards, Colony Count, Microbial, DNA, Bacterial/analysis, Enterococcus/classification/growth & development/isolation & purification, Food Microbiology, Genotype, Goats, Humans, Industrial Microbiology, Italy, Lactobacillaceae/classification/growth & development/isolation & purification, Lactobacillus/classification/growth & development/isolation & purification, Lactococcus/classification/growth & development/isolation & purification, Leuconostoc/classification/growth & development/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis, Random Amplified Polymorphic DNA Technique, Species Specificity
Links
Book Title
Database
Publisher
Data Source
Authors
Colombo,E., Franzetti,L., Frusca,M., Scarpellini,M.
Original/Translated Title
URL
Date of Electronic
PMCID
Editors
Phenotypic and genotypic identification of lactic acid bacteria isolated from ethnic fermented bamboo tender shoots of North East India 2008 Food Microbiology Laboratory, Department of Botany, Sikkim Government College, Gangtok 737102, Sikkim, India.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
International journal of food microbiology
Periodical, Abbrev.
Int.J.Food Microbiol.
Pub Date Free Form
15-Jan
Volume
121
Issue
1
Start Page
35
Other Pages
40
Notes
JID: 8412849; 0 (DNA, Bacterial); 2007/04/05 [received]; 2007/08/29 [revised]; 2007/10/24 [accepted]; 2007/11/01 [aheadofprint]; ppublish
Place of Publication
Netherlands
ISSN/ISBN
0168-1605; 0168-1605
Accession Number
PMID: 18036695
Language
eng
SubFile
Journal Article; Research Support, Non-U.S. Gov't; IM
DOI
S0168-1605(07)00563-6 [pii]
Output Language
Unknown(0)
PMID
18036695
Abstract
Mesu, soidon, soibum and soijim are ethnic fermented bamboo tender shoot products prepared by the people in North East India. Microbiological analysis of mesu, soidon, soibum and soijim showed the population dominated by lactic acid bacteria (LAB) ranging up to 10(8) cfu g(-1). The phenotypic characterisation of predominant LAB isolated from the fermented bamboo shoot products was based on general morphology, physiological tests, API and Biolog systems. The genotypic characterisation of LAB was based on RAPD-PCR, rep PCR, species-specific PCR techniques, 16S rRNA gene sequencing and DNA-DNA hybridisation. Predominant functional LAB strains associated with the fermented bamboo shoot products were identified as Lactobacillus brevis, Lb. plantarum, Lb. curvatus, Pediococcus pentosaceus, Leuconostoc mesenteroides subsp. mesenteroides, Leuc. fallax, Leuc. lactis, Leuc. citreum and Enterococcus durans.
Descriptors
Bambusa/microbiology, Colony Count, Microbial, DNA, Bacterial/analysis, Enterococcus/classification/isolation & purification, Fermentation, Food Microbiology, Genotype, Humans, Hydrogen-Ion Concentration, India, Lactobacillus/classification/isolation & purification, Leuconostoc/classification/isolation & purification, Pediococcus/classification/isolation & purification, Phenotype, Phylogeny, Poaceae/microbiology, Random Amplified Polymorphic DNA Technique, Species Specificity
Links
Book Title
Database
Publisher
Data Source
Authors
Tamang,B., Tamang,J. P., Schillinger,U., Franz,C. M., Gores,M., Holzapfel,W. H.
Original/Translated Title
URL
Date of Electronic
20071101
PMCID
Editors
Phenotypic and genotypic identification of lactic acid bacteria isolated from traditional pickles of the Cubuk region in Turkey 2015 Faculty of Engineering, Department of Food Engineering, Ankara University, Ankara, Turkey, sbagder@eng.ankara.edu.tr.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Folia microbiologica
Periodical, Abbrev.
Folia Microbiol.(Praha)
Pub Date Free Form
May
Volume
60
Issue
3
Start Page
241
Other Pages
251
Notes
JID: 0376757; 0 (DNA, Bacterial); 0 (RNA, Ribosomal, 16S); 33X04XA5AT (Lactic Acid); 2014/07/03 [received]; 2014/11/03 [accepted]; 2014/11/18 [aheadofprint]; ppublish
Place of Publication
United States
ISSN/ISBN
1874-9356; 0015-5632
Accession Number
PMID: 25404550
Language
eng
SubFile
Journal Article; Research Support, Non-U.S. Gov't; IM
DOI
10.1007/s12223-014-0363-x [doi]
Output Language
Unknown(0)
PMID
25404550
Abstract
A total of 152 lactic acid bacteria (LAB) were isolated from pickles produced in the Ankara-Cubuk region. These isolates were clustered into eight groups on the basis of their phenotypic characteristics including cell morphology, CO2 production from glucose, growth at 10 and 45 degrees C, growth in 6.5 % NaCl, and growth at pH 9.6. API 50 CH carbohydrate fermentation test, 16S ribosomal RNA (rRNA) sequence analysis, and sodium dodecyl sulfate-acrylamide gel electrophoresis (SDS-PAGE) whole-cell protein profile analysis were also performed for precise identification of the isolates at the species level. Molecular identification revealed that the most prevalent LAB species involved in pickle fermentation were Pediococcus ethanolidurans (46 isolates, 30.3 %), Lactobacillus brevis (37 isolates, 24.3 %), Lactobacillus plantarum (37 isolates, 24.3 %), and Lactobacillus buchneri (15 isolates, 9.9 %). Other LAB were found in minor frequencies such as Pediococcus parvulus (8 isolates, 5.3 %), Lactobacillus namurensis (6 isolates, 3.9 %), Lactobacillus diolivorans (1 isolate, 0.7 %), Lactobacillus parabrevis (1 isolate, 0.7 %), and Enterococcus casseliflavus (1 isolate, 0.7 %). When results of phenotypic and genotypic identification methods were compared, differences in the species distribution of LAB associated with pickles were defined between the API and the 16S rRNA sequencing. The API 50 CHL test coincided with the 16S rRNA results in 71 out of the 152 tested isolates, indicating that API gave unreliable identification results. A clear correlation could not be found between the results of whole-cell SDS profiles and 16S rRNA sequencing. Therefore, molecular characterization by 16S rRNA sequencing was considered to be the most reliable method for identifying isolates. The results presented in this work provide insight in to the LAB population associated with traditional Cubuk pickles and constitute a LAB strain resource for further studies involving the development of starter cultures.
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Database
Publisher
Data Source
Authors
Bagder Elmaci,S., Tokatli,M., Dursun,D., Ozcelik,F., Sanlibaba,P.
Original/Translated Title
URL
Date of Electronic
20141118
PMCID
Editors
Phenotypic and phylogenetic analysis of lactic acid bacteria isolated from forage crops and grasses in the Tibetan Plateau 2012 Henan Provincial Key Laboratory of Ion Beam Bio-engineering, Zhengzhou University, 450052, Zhengzhou, Henan, P. R. China.
Source Type
Print(0)
Ref Type
Journal Article
Periodical, Full
Journal of microbiology (Seoul, Korea)
Periodical, Abbrev.
J.Microbiol.
Pub Date Free Form
Feb
Volume
50
Issue
1
Start Page
63
Other Pages
71
Notes
GENBANK/AB602799; GENBANK/AB602800; GENBANK/AB602801; GENBANK/AB602802; GENBANK/AB602803; GENBANK/AB602804; GENBANK/AB602805; GENBANK/AB602806; GENBANK/AB602807; GENBANK/AB602808; GENBANK/AB602809; GENBANK/AB602810; GENBANK/AB602811; GENBANK/AB602812; GEN
Place of Publication
Korea (South)
ISSN/ISBN
1976-3794; 1225-8873
Accession Number
PMID: 22367939
Language
eng
SubFile
Journal Article; Research Support, Non-U.S. Gov't; IM
DOI
10.1007/s12275-012-1284-5 [doi]
Output Language
Unknown(0)
PMID
22367939
Abstract
A total of 140 lactic acid bacteria (LAB) strains were isolated from corn, alfalfa, clover, sainfoin, and Indian goosegrass in the Tibetan Plateau. According to phenotypic and chemotaxonomic characteristics, 16S rDNA sequence, and recA gene PCR amplification, these LAB isolates were identified as belonging to five genera and nine species. Corn contained more LAB species than other forage crops. Leuconostoc pseudomesenteroides, Lactococcus lactis subsp. lactis, Lactobacillus brevis, and Weissella paramesenteroides were dominant members of the LAB population on alfalfa, clover, sainfoin, and Indian goosegrass, respectively. The comprehensive 16S rDNA and recA-based approach effectively described the LAB community structure of the relatively abundant LAB species distributed on different forage crops. This is the first report describing the diversity and natural populations of LAB associated with Tibetan forage crops, and most isolates grow well at or below 10 degrees C. The results will be valuable for the future design of appropriate inoculants for silage fermentation in this very cold area.
Descriptors
Links
Book Title
Database
Publisher
Data Source
Authors
Pang,H., Tan,Z., Qin,G., Wang,Y., Li,Z., Jin,Q., Cai,Y.
Original/Translated Title
URL
Date of Electronic
20120227
PMCID
Editors